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Вопросы вирусологии. 2021; 66: 340-345

Дельта-подобные вирусы (Kolmioviridae: Deltavirus) животных и происхождение вируса гепатита D (hepatitis D virus) человека

Исаева О. В., Кюрегян К. К., Михайлов М. И.

https://doi.org/10.36233/0507-4088-78

Аннотация

Вирус гепатита D (дельта, δ) (hepatitis D virus, HDV) открыт более 40 лет назад, однако представления о его происхождении и эволюции крайне ограничены. Причиной этому служило отсутствие до недавнего времени данных о существовании каких-либо вирусов, подобных HDV. Обнаружение в последние годы последовательностей новых дельта-подобных вирусов у широкого спектра представителей позвоночных (Vertebrata) и беспозвоночных (Invertebrata) позволило пересмотреть взгляды на возникновение HDV и способствовало пониманию места этого уникального вируса среди зоонозных инфекционных агентов вирусной природы. Целью данного обзора является анализ недавно опубликованных исследований, посвящённых новым дельта-подобным вирусам и их биологической характеристике.

Список литературы

1. Rizzetto M., Canese M.G., Aricò S., Crivelli O., Trepo C., Bonino F., et al. Immunofluorescence detection of new antigen-antibody system (delta/anti-delta) associated to hepatitis B virus in liver and in serum of HBsAg carriers. Gut. 1977; 18(12): 997–1003. https://doi.org/10.1136/gut.18.12.997

2. Lok A.S., Negro F., Asselah T., Farci P., Rizzetto M. Endpoints and new options for treatment of chronic hepatitis D. Hepatology. 2021. https://doi.org/10.1002/hep.32082

3. Urban S., Neumann-Haefelin C., Lampertico P. Hepatitis D virus in 2021: virology, immunology and new treatment approaches for a difficult-to-treat disease. Gut. 2021; 70(9): 1782–94. https://dx.doi.org/10.1136/gutjnl-2020-323888

4. Magnius L., Taylor J., Mason W.S., Sureau C., Dény P., Norder H. ICTV Report Consortium. ICTV virus taxonomy profile: Deltavirus. J. Gen. Virol. 2018; 99(12): 1565–6. https://doi.org/10.1099/jgv.0.001150

5. Taylor J., Pelchat M. Origin of hepatitis delta virus. Future Microbiol. 2010; 5(3): 393–402. https://doi.org/10.2217/fmb.10.15

6. Lasda E., Parker R. Circular RNAs: Diversity of form and function. RNA. 2014; 20(12): 1829–42. https://doi.org/10.1261/rna.047126.114

7. Riccitelli N., Lupták A. HDV family of self-cleaving ribozymes. Prog. Mol. Biol. Transl. Sci. 2013; 120: 123–71. https://doi.org/10.1016/B978-0-12-381286-5.00004-4

8. Huang C.R., Lo S.J. Evolution and diversity of the human hepatitis D virus genome. Adv. Bioinformatics. 2010; 2010: 323654. https://doi.org/10.1155/2010/323654

9. Wille M., Netter H.J., Littlejohn M., Yuen L., Shi M., Eden J.S., et al. A divergent hepatitis D-like agent in birds. Viruses. 2018; 10(12): 720. https://doi.org/10.3390/v10120720

10. Brazas R., Ganem D. A cellular homolog of hepatitis delta antigen: Implications for viral replication and evolution. Science. 1996; 274(5284): 90–4. https://doi.org/10.1126/science.274.5284.90

11. Salehi-Ashtiani K., Lupták A., Litovchick A., Szostak J.W. A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene. Science. 2006; 313(5794): 1788–92. https://doi.org/10.1126/science.1129308

12. Chang W.S., Pettersson J.H., Le Lay C., Shi M., Lo N., Wille M., et al. Novel hepatitis D-like agents in vertebrates and invertebrates. Virus Evol. 2019; 5(2): vez021. https://doi.org/10.1093/ve/vez021

13. Hetzel U., Szirovicza L., Smura T., Prähauser B., Vapalahti O., Kipar A., et al. Identification of a novel deltavirus in Boa constrictors. mBio. 2019; 10(2): e00014–19. https://doi.org/10.1128/mbio.00014-19

14. Shi M., Lin X.D., Tian J.H., Chen L.J., Chen X., Li C.X., et al. Redefining the invertebrate RNA virosphere. Nature. 2016; 540(7634): 539–43. https://doi.org/10.1038/nature20167

15. Shi M., Lin X.D., Chen X., Tian J.H., Chen L.J., Li K., et al. The evolutionary history of vertebrate RNA viruses. Nature. 2018; 556(7700): 197–202. https://doi.org/10.1038/s41586-018-0012-7

16. Iwamoto M., Shibata Y., Kawasaki J., Kojima S., Li Y.T., Iwami S., et al. Identification of novel avian and mammalian deltaviruses provides new insights into deltavirus evolution. Virus Evol. 2021; 7(1): veab003. https://doi.org/10.1093/ve/veab003

17. Paraskevopoulou S., Pirzer F., Goldmann N., Schmid J., Corman V.M., Gottula L.T., et al. Mammalian deltavirus without hepadnavirus coinfection in the neotropical rodent Proechimys semispinosus. Proc. Natl. Acad. Sci. USA. 2020; 117(30): 17977–83. https://doi.org/10.1073/pnas.2006750117

18. Walker P.J., Siddell S.G., Lefkowitz E.J., Mushegian A.R., Adriaenssens E.M., Alfenas-Zerbini P., et al. Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021). Arch. Virol. 2021; 166(9): 2633–48. https://doi.org/10.1007/s00705-021-05156-1

19. Szirovicza L., Hetzel U., Kipar A., Martinez-Sobrido L., Vapalahti O., Hepojoki J. Snake deltavirus utilizes envelope proteins of different viruses to generate infectious particles. mBio. 2020; 11(2): e03250–19. https://doi.org/10.1128/mBio.03250-19

20. de la Peña M., Ceprián R., Casey J.L., Cervera A. Hepatitis delta virus-like circular RNAs from diverse metazoans encode conserved hammerhead ribozymes. Virus Evol. 2021; 7(1): veab016. https://doi.org/10.1093/ve/veab016

21. Taylor J.M. Infection by hepatitis delta virus. Viruses. 2020; 12(6): 648. https://doi.org/10.3390/v12060648

22. Lai M.M. RNA replication without RNA-dependent RNA polymerase: Surprises from hepatitis delta virus. J. Virol. 2005; 79(13): 7951–8. https://doi.org/10.1128/jvi.79.13.7951-7958.2005

23. Fiedler M., Roggendorf M. Vaccination against Hepatitis Delta Virus Infection: Studies in the Woodchuck (Marmota monax) Model. Intervirology. 2001; 44(2-3): 154–61. https://doi.org/10.1159/000050042

24. Perez-Vargas J., Amirache F., Boson B., Mialon C., Freitas N., Sureau C., et al. Enveloped viruses distinct from HBV induce dissemination of hepatitis D virus in vivo. Nat. Commun. 2019; 10(1): 2098. https://doi.org/10.1038/s41467-019-10117-z

25. Netter H.J., Barrios M.H., Littlejohn M., Yuen L.K.W. Hepatitis Delta Virus (HDV) and delta-like agents: Insights into their origin. Front. Microbiol. 2021; 12: 652962. https://doi.org/10.3389/fmicb.2021.652962

26. Bergner L.M., Orton R.J., Broos A., Tello C., Becker D.J., Carrera J.E., et al. Diversification of mammalian deltaviruses by host shifting. Proc. Natl. Acad. Sci. USA. 2021; 118(3): e2019907118. https://doi.org/10.1073/pnas.2019907118

Problems of Virology. 2021; 66: 340-345

Animal delta-like viruses (Kolmioviridae: Deltavirus) and the origin of the human hepatitis D virus (HDV)

Isaeva O. V., Kyuregyan K. K., Mikhailov M. I.

https://doi.org/10.36233/0507-4088-78

Abstract

Hepatitis D (delta, δ) virus (HDV) was discovered more than 40 years ago, but the understanding of its origin and evolution is poor. This is mainly due to the lack, until recently, of data on the existence of any viruses similar to HDV. The discovery in recent years of sequences of new delta-like agents in a wide range of vertebrate (Vertebrata) and invertebrate (Invertebrata) species has facilitated a revision of views on the origin of HDV and contributed to understanding the place of this unique virus among other animals’ viral agents. The purpose of this review is to analyze the latest published data on new delta-like agents and their biological characteristics.

References

1. Rizzetto M., Canese M.G., Aricò S., Crivelli O., Trepo C., Bonino F., et al. Immunofluorescence detection of new antigen-antibody system (delta/anti-delta) associated to hepatitis B virus in liver and in serum of HBsAg carriers. Gut. 1977; 18(12): 997–1003. https://doi.org/10.1136/gut.18.12.997

2. Lok A.S., Negro F., Asselah T., Farci P., Rizzetto M. Endpoints and new options for treatment of chronic hepatitis D. Hepatology. 2021. https://doi.org/10.1002/hep.32082

3. Urban S., Neumann-Haefelin C., Lampertico P. Hepatitis D virus in 2021: virology, immunology and new treatment approaches for a difficult-to-treat disease. Gut. 2021; 70(9): 1782–94. https://dx.doi.org/10.1136/gutjnl-2020-323888

4. Magnius L., Taylor J., Mason W.S., Sureau C., Dény P., Norder H. ICTV Report Consortium. ICTV virus taxonomy profile: Deltavirus. J. Gen. Virol. 2018; 99(12): 1565–6. https://doi.org/10.1099/jgv.0.001150

5. Taylor J., Pelchat M. Origin of hepatitis delta virus. Future Microbiol. 2010; 5(3): 393–402. https://doi.org/10.2217/fmb.10.15

6. Lasda E., Parker R. Circular RNAs: Diversity of form and function. RNA. 2014; 20(12): 1829–42. https://doi.org/10.1261/rna.047126.114

7. Riccitelli N., Lupták A. HDV family of self-cleaving ribozymes. Prog. Mol. Biol. Transl. Sci. 2013; 120: 123–71. https://doi.org/10.1016/B978-0-12-381286-5.00004-4

8. Huang C.R., Lo S.J. Evolution and diversity of the human hepatitis D virus genome. Adv. Bioinformatics. 2010; 2010: 323654. https://doi.org/10.1155/2010/323654

9. Wille M., Netter H.J., Littlejohn M., Yuen L., Shi M., Eden J.S., et al. A divergent hepatitis D-like agent in birds. Viruses. 2018; 10(12): 720. https://doi.org/10.3390/v10120720

10. Brazas R., Ganem D. A cellular homolog of hepatitis delta antigen: Implications for viral replication and evolution. Science. 1996; 274(5284): 90–4. https://doi.org/10.1126/science.274.5284.90

11. Salehi-Ashtiani K., Lupták A., Litovchick A., Szostak J.W. A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene. Science. 2006; 313(5794): 1788–92. https://doi.org/10.1126/science.1129308

12. Chang W.S., Pettersson J.H., Le Lay C., Shi M., Lo N., Wille M., et al. Novel hepatitis D-like agents in vertebrates and invertebrates. Virus Evol. 2019; 5(2): vez021. https://doi.org/10.1093/ve/vez021

13. Hetzel U., Szirovicza L., Smura T., Prähauser B., Vapalahti O., Kipar A., et al. Identification of a novel deltavirus in Boa constrictors. mBio. 2019; 10(2): e00014–19. https://doi.org/10.1128/mbio.00014-19

14. Shi M., Lin X.D., Tian J.H., Chen L.J., Chen X., Li C.X., et al. Redefining the invertebrate RNA virosphere. Nature. 2016; 540(7634): 539–43. https://doi.org/10.1038/nature20167

15. Shi M., Lin X.D., Chen X., Tian J.H., Chen L.J., Li K., et al. The evolutionary history of vertebrate RNA viruses. Nature. 2018; 556(7700): 197–202. https://doi.org/10.1038/s41586-018-0012-7

16. Iwamoto M., Shibata Y., Kawasaki J., Kojima S., Li Y.T., Iwami S., et al. Identification of novel avian and mammalian deltaviruses provides new insights into deltavirus evolution. Virus Evol. 2021; 7(1): veab003. https://doi.org/10.1093/ve/veab003

17. Paraskevopoulou S., Pirzer F., Goldmann N., Schmid J., Corman V.M., Gottula L.T., et al. Mammalian deltavirus without hepadnavirus coinfection in the neotropical rodent Proechimys semispinosus. Proc. Natl. Acad. Sci. USA. 2020; 117(30): 17977–83. https://doi.org/10.1073/pnas.2006750117

18. Walker P.J., Siddell S.G., Lefkowitz E.J., Mushegian A.R., Adriaenssens E.M., Alfenas-Zerbini P., et al. Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021). Arch. Virol. 2021; 166(9): 2633–48. https://doi.org/10.1007/s00705-021-05156-1

19. Szirovicza L., Hetzel U., Kipar A., Martinez-Sobrido L., Vapalahti O., Hepojoki J. Snake deltavirus utilizes envelope proteins of different viruses to generate infectious particles. mBio. 2020; 11(2): e03250–19. https://doi.org/10.1128/mBio.03250-19

20. de la Peña M., Ceprián R., Casey J.L., Cervera A. Hepatitis delta virus-like circular RNAs from diverse metazoans encode conserved hammerhead ribozymes. Virus Evol. 2021; 7(1): veab016. https://doi.org/10.1093/ve/veab016

21. Taylor J.M. Infection by hepatitis delta virus. Viruses. 2020; 12(6): 648. https://doi.org/10.3390/v12060648

22. Lai M.M. RNA replication without RNA-dependent RNA polymerase: Surprises from hepatitis delta virus. J. Virol. 2005; 79(13): 7951–8. https://doi.org/10.1128/jvi.79.13.7951-7958.2005

23. Fiedler M., Roggendorf M. Vaccination against Hepatitis Delta Virus Infection: Studies in the Woodchuck (Marmota monax) Model. Intervirology. 2001; 44(2-3): 154–61. https://doi.org/10.1159/000050042

24. Perez-Vargas J., Amirache F., Boson B., Mialon C., Freitas N., Sureau C., et al. Enveloped viruses distinct from HBV induce dissemination of hepatitis D virus in vivo. Nat. Commun. 2019; 10(1): 2098. https://doi.org/10.1038/s41467-019-10117-z

25. Netter H.J., Barrios M.H., Littlejohn M., Yuen L.K.W. Hepatitis Delta Virus (HDV) and delta-like agents: Insights into their origin. Front. Microbiol. 2021; 12: 652962. https://doi.org/10.3389/fmicb.2021.652962

26. Bergner L.M., Orton R.J., Broos A., Tello C., Becker D.J., Carrera J.E., et al. Diversification of mammalian deltaviruses by host shifting. Proc. Natl. Acad. Sci. USA. 2021; 118(3): e2019907118. https://doi.org/10.1073/pnas.2019907118