Вопросы вирусологии. 2018; 63: 5-10
ГИГАНТСКИЕ ВИРУСЫ: ПРОИСХОЖДЕНИЕ, РАСПРОСТРАНЕНИЕ, ТАКСОНОМИЧЕСКИЕ, СТРУКТУРНО-МОРФОЛОГИЧЕСКИЕ И МОЛЕКУЛЯРНО-БИОЛОГИЧЕСКИЕ ХАРАКТЕРИСТИКИ
https://doi.org/10.18821/0507-4088-2018-63-1-5-10Аннотация
Список литературы
1. Abergel C., Legendre M., Claverie J.M. The rapidly expanding universe of giant viruses: Mimivirus, Pandoravirus, Pithovirus and Mollivirus. FEMS Microbiol. Rev. 2015; 39(6): 779-96.
2. Lwoff A., Tournier P. The classification of viruses. Ann. Rev. Microbiol. 1966; 20: 45-74.
3. Львов Д.К. Экология вирусов. В кн.: Львов Д.К., ред. Руководство по вирусологии. Вирусы и вирусные инфекции. М.: МИА; 2013: 68-86
4. Aherfi S., Colson P., La Scola B, Raoult D. Giant Viruses of Amoebas: An Update. Front. Microbiol. 2016; 7: 349.
5. Claverie J.M., Abergel C. Family Mimiviridae. In: King A.M., Adams M.J., Carstens E.B., Lefkowitz E.J., eds. Virus taxonomy: classification and nomenclature of viruses: ninth report of the International Committee on Taxonomy of Viruses. London: Academic Press; 2012: 223-8.
6. Львов Д.К., Альховский С.В., Щелканов М.Ю. Мимивирусы (Mimiviridae). В кн.: Львов Д.К., ред. Руководство по вирусологии. Вирусы и вирусные инфекции человека и животных. М.: МИА; 2013: 166
7. La Scola B., Audic S., Robert C., Jungang L., de Lamballerie X., Drancourt M. et al. A giant virus in amoebae. Science. 2003; 299(5615): 2033.
8. Raoult D., La Scola B., Birtles R. The discovery and characterization of Mimivirus, the largest known virus and putative pneumonia agent. Clin. Infect. Dis. 2007; 45(1): 95-102.
9. Legendre M., Lartigue A., Bertaux L., Jeudy S., Bartoli J., Lescot M. et al. In-depth study of Mollivirus sibericum, a new 30,000-y-old giant virus infecting Acanthamoeba. Proc. Natl. Acad. Sci. USA. 2015; 112(38): 5327-35.
10. Benamar S., Reteno D.G., Bandaly V., Labas N., Raoult D., La Scola B. Faustoviruses: Comparative Genomics of New Megavirales Family Members. Front. Microbiol. 2016; 7(3): 1-9.
11. Iyer L.M., Aravind L., Koonin E.V. Common origin of four diverse families of large eukaryotic DNA viruses. J. Virol. 2001; 75(23): 11720-34.
12. Verneau J., Levasseur A., Raoult D., La Scola B., Colson P. MG-Digger: An Automated Pipeline to Search for Giant Virus-Related Sequences in Metagenomes. Front. Microbiol. 2016; 7(428): 1-11.
13. Balczun C., Scheid P.L. Free-Living Amoebae as Hosts for and Vectors of Intracellular Microorganisms with Public Health Significance. Viruses. 2017; 9(4): 1-18.
14. Berger P., Papazian L., Drancourt M., La Scola B., Auffray J.P., Raoult D. Ameba-associated microorganisms and diagnosis of nosocomial pneumonia. Emerg. Infect. Dis. 2006; 12(2): 248-55.
15. Львов Д.К. Мимивирусная респираторная инфекция. В кн.: Львов Д.К., ред. Руководство по вирусологии. Вирусы и вирусные инфекции человека и животных. М.: МИА; 2013: 598-9
16. La Scola B., Marrie T.J., Auffray J.P., Raoult D. Mimivirus in pneumonia patients. Emerg. Infect. Dis. 2005; 11(3): 449-52.
17. Raoult D., La Scola B., Birtles R. The discovery and characterization of Mimivirus, the largest known virus and putative pneumonia agent. Clin. Infect. Dis. 2007; 45(1): 95-102.
18. Raoult D., Renesto P., Brouqui P. Laboratory infection of a technician by mimivirus. Ann. Intern. Med. 2006; 144(9): 702-3.
19. Dare R.K., Chittaganpitch M., Erdman D.D. Screening pneumonia patients for mimivirus. Emerg. Infect. Dis. 2008; 14(3): 465-7.
20. Monier A., Claverie J.M., Ogata H. Taxonomic distribution of large DNA viruses in the sea. Genome Biol. 2008; 9(7): R106.
21. Pelletier N., Raoult D., La Scola B. Specific recognition of the major capsid protein of Acanthamoeba polyphaga mimivirus by sera of patients infected by Francisella tularensis. FEMS Microbiol. Lett. 2009; 297(1): 117-23.
22. Parola P., Renvoise A., Botelho-Nevers E., La Scola B., Desnues C., Raoult D. Acanthamoeba polyphaga mimivirus virophage seroconversion in travelers returning from Laos. Emerg. Infect. Dis. 2012; 18(9): 1500-2.
23. Dornas F.P., Khalil J.Y.B., Pagnier I., Didier R., Abrahao J., La Scola B. Isolation of new Brazilian giant viruses from environmental samples using a panel of protozoa. Front. Microbiol. 2015; 6(1086): 1-9.
24. Klose T., Kuznetsov Y.G., Xiao C., Sun S., McPherson A., Rossmann M.G. The three-dimensional structure of Mimivirus. Intervirology. 2010; 53(5): 268-73.
25. Sinclair R.M., Ravantti J.J., Bamford D.H. Nucleic and Amino Acid Sequences Support Structure-Based Viral Classification. J. Virol. 2017; 91(8): 1-13.
26. Arslan D., Legendre M., Seltzer V., Abergel C., Claverie J.M. Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Proc. Natl. Acad. Sci. USA. 2011; 108(42): 17486-91.
27. Yoosuf N., Yutin N., Colson P., Shabalina S.A., Pagnier I., Robert C. et al. Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the megavirus lineage. Genome Biol. Evol. 2012; 4(12): 1324-30.
28. Legendre M., Bartoli J., Shmakova L., Jeudy S., Labadie K., Adrait A. et al. Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc. Natl. Acad. Sci. USA. 2014; 111(11): 4274-9.
29. Antwerpen M.H., Georgi E., Zoeller L., Woelfel R., Stoecker K., Scheid P. Whole-Genome Sequencing of a Pandoravirus Isolated from Keratitis-Inducing Acanthamoeba. Genome Announc. 2015; 3(2): 1-2.
30. Claverie J.M., Abergel C. From extraordinary endocytobionts to pandoraviruses. Comment on Scheid et al.: Some secrets are revealed: parasitic keratitis amoebae as vectors of the scarcely described pandoraviruses to humans. Parasitol. Res. 2015; 114(4): 1625-7.
31. Abergel C., Claverie J.M. Pithovirus sibericum: réveil d’un virus géant de plus de 30 000 ans. Médecine/sciences. 2014; 30(3): 329-31.
32. Levasseur A., Andreani J., Delerce J., Bou Khalil J., Robert C., La Scola B. et al. Comparison of a Modern and Fossil Pithovirus Reveals Its Genetic Conservation and Evolution. Genome Biol. Evol. 2016; 8(8): 2333-9.
33. Andreani J., Aherfi S., Bou Khalil J.Y., Di Pinto F., Bitam I., Raoult D. et al. Cedratvirus, a Double-Cork Structured Giant Virus, is a Distant Relative of Pithoviruses. Viruses. 2016; 8(300): 1-11.
34. Bekliz M., Verneau J., Benamar S., Raoult D., La Scola B., Colson P.A. New Zamilon-like Virophage Partial Genome Assembled from a Bioreactor Metagenome. Front. Microbiol. 2015; 6(1308): 1-12.
35. Chelikani V., Ranjan T., Zade A., Shukla A., Kondabagil K. Genome segregation and packaging machinery in Acanthamoeba polyphaga mimivirus is reminiscent of bacterial apparatus. J. Virol. 2014; 88(11): 6069-75.
36. Maumus F., Epert A., Nogué F., Blanc G. Plant genomes enclose footprints of past infections by giant virus relatives. Nat. Commun. 2014; 5(4268): 1-10.
37. Suárez C., Welsch S., Chlanda P., Hagen W., Hoppe S., Kolovou A. et al. Open membranes are the precursors for assembly of large DNA viruses. Cell. Microbiol. 2013; 15(11): 1883-95.
38. Maumus F., Blanc G. Study of Gene Trafficking between Acanthamoeba and Giant Viruses Suggests an Undiscovered Family of Amoeba-Infecting Viruses. Genome Biol. Evol. 2016; 8(11): 3351-63.
39. Sharma V., Colson P., Chabrol O., Scheid P., Pontarotti P., Raoult D. Welcome to pandoraviruses at the ‘Fourth TRUC’ club. Front. Microbiol. 2015; 6(423): 1-11.
40. Sun C., Feschotte C., Wu Z., Mueller R.L. DNA transposons have colonized the genome of the giant virus Pandoravirussalinus. BMC Biol. 2015; 13(38): 1-12.
41. Claverie J.M., Abergel C. Giant viruses: The difficult breaking of multiple epistemological barriers. Stud. Hist. Philos. Biol. Biomed. Sci. 2016; 59: 89-99.
Problems of Virology. 2018; 63: 5-10
GIANT VIRUSES: ORIGIN, SPREADING, TAXONOMICAL, STRUCTURAL-MORPHOLOGICAL AND MOLECULAR-BIOLOGICAL CHARACTERISTICS
https://doi.org/10.18821/0507-4088-2018-63-1-5-10Abstract
References
1. Abergel C., Legendre M., Claverie J.M. The rapidly expanding universe of giant viruses: Mimivirus, Pandoravirus, Pithovirus and Mollivirus. FEMS Microbiol. Rev. 2015; 39(6): 779-96.
2. Lwoff A., Tournier P. The classification of viruses. Ann. Rev. Microbiol. 1966; 20: 45-74.
3. L'vov D.K. Ekologiya virusov. V kn.: L'vov D.K., red. Rukovodstvo po virusologii. Virusy i virusnye infektsii. M.: MIA; 2013: 68-86
4. Aherfi S., Colson P., La Scola B, Raoult D. Giant Viruses of Amoebas: An Update. Front. Microbiol. 2016; 7: 349.
5. Claverie J.M., Abergel C. Family Mimiviridae. In: King A.M., Adams M.J., Carstens E.B., Lefkowitz E.J., eds. Virus taxonomy: classification and nomenclature of viruses: ninth report of the International Committee on Taxonomy of Viruses. London: Academic Press; 2012: 223-8.
6. L'vov D.K., Al'khovskii S.V., Shchelkanov M.Yu. Mimivirusy (Mimiviridae). V kn.: L'vov D.K., red. Rukovodstvo po virusologii. Virusy i virusnye infektsii cheloveka i zhivotnykh. M.: MIA; 2013: 166
7. La Scola B., Audic S., Robert C., Jungang L., de Lamballerie X., Drancourt M. et al. A giant virus in amoebae. Science. 2003; 299(5615): 2033.
8. Raoult D., La Scola B., Birtles R. The discovery and characterization of Mimivirus, the largest known virus and putative pneumonia agent. Clin. Infect. Dis. 2007; 45(1): 95-102.
9. Legendre M., Lartigue A., Bertaux L., Jeudy S., Bartoli J., Lescot M. et al. In-depth study of Mollivirus sibericum, a new 30,000-y-old giant virus infecting Acanthamoeba. Proc. Natl. Acad. Sci. USA. 2015; 112(38): 5327-35.
10. Benamar S., Reteno D.G., Bandaly V., Labas N., Raoult D., La Scola B. Faustoviruses: Comparative Genomics of New Megavirales Family Members. Front. Microbiol. 2016; 7(3): 1-9.
11. Iyer L.M., Aravind L., Koonin E.V. Common origin of four diverse families of large eukaryotic DNA viruses. J. Virol. 2001; 75(23): 11720-34.
12. Verneau J., Levasseur A., Raoult D., La Scola B., Colson P. MG-Digger: An Automated Pipeline to Search for Giant Virus-Related Sequences in Metagenomes. Front. Microbiol. 2016; 7(428): 1-11.
13. Balczun C., Scheid P.L. Free-Living Amoebae as Hosts for and Vectors of Intracellular Microorganisms with Public Health Significance. Viruses. 2017; 9(4): 1-18.
14. Berger P., Papazian L., Drancourt M., La Scola B., Auffray J.P., Raoult D. Ameba-associated microorganisms and diagnosis of nosocomial pneumonia. Emerg. Infect. Dis. 2006; 12(2): 248-55.
15. L'vov D.K. Mimivirusnaya respiratornaya infektsiya. V kn.: L'vov D.K., red. Rukovodstvo po virusologii. Virusy i virusnye infektsii cheloveka i zhivotnykh. M.: MIA; 2013: 598-9
16. La Scola B., Marrie T.J., Auffray J.P., Raoult D. Mimivirus in pneumonia patients. Emerg. Infect. Dis. 2005; 11(3): 449-52.
17. Raoult D., La Scola B., Birtles R. The discovery and characterization of Mimivirus, the largest known virus and putative pneumonia agent. Clin. Infect. Dis. 2007; 45(1): 95-102.
18. Raoult D., Renesto P., Brouqui P. Laboratory infection of a technician by mimivirus. Ann. Intern. Med. 2006; 144(9): 702-3.
19. Dare R.K., Chittaganpitch M., Erdman D.D. Screening pneumonia patients for mimivirus. Emerg. Infect. Dis. 2008; 14(3): 465-7.
20. Monier A., Claverie J.M., Ogata H. Taxonomic distribution of large DNA viruses in the sea. Genome Biol. 2008; 9(7): R106.
21. Pelletier N., Raoult D., La Scola B. Specific recognition of the major capsid protein of Acanthamoeba polyphaga mimivirus by sera of patients infected by Francisella tularensis. FEMS Microbiol. Lett. 2009; 297(1): 117-23.
22. Parola P., Renvoise A., Botelho-Nevers E., La Scola B., Desnues C., Raoult D. Acanthamoeba polyphaga mimivirus virophage seroconversion in travelers returning from Laos. Emerg. Infect. Dis. 2012; 18(9): 1500-2.
23. Dornas F.P., Khalil J.Y.B., Pagnier I., Didier R., Abrahao J., La Scola B. Isolation of new Brazilian giant viruses from environmental samples using a panel of protozoa. Front. Microbiol. 2015; 6(1086): 1-9.
24. Klose T., Kuznetsov Y.G., Xiao C., Sun S., McPherson A., Rossmann M.G. The three-dimensional structure of Mimivirus. Intervirology. 2010; 53(5): 268-73.
25. Sinclair R.M., Ravantti J.J., Bamford D.H. Nucleic and Amino Acid Sequences Support Structure-Based Viral Classification. J. Virol. 2017; 91(8): 1-13.
26. Arslan D., Legendre M., Seltzer V., Abergel C., Claverie J.M. Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Proc. Natl. Acad. Sci. USA. 2011; 108(42): 17486-91.
27. Yoosuf N., Yutin N., Colson P., Shabalina S.A., Pagnier I., Robert C. et al. Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the megavirus lineage. Genome Biol. Evol. 2012; 4(12): 1324-30.
28. Legendre M., Bartoli J., Shmakova L., Jeudy S., Labadie K., Adrait A. et al. Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc. Natl. Acad. Sci. USA. 2014; 111(11): 4274-9.
29. Antwerpen M.H., Georgi E., Zoeller L., Woelfel R., Stoecker K., Scheid P. Whole-Genome Sequencing of a Pandoravirus Isolated from Keratitis-Inducing Acanthamoeba. Genome Announc. 2015; 3(2): 1-2.
30. Claverie J.M., Abergel C. From extraordinary endocytobionts to pandoraviruses. Comment on Scheid et al.: Some secrets are revealed: parasitic keratitis amoebae as vectors of the scarcely described pandoraviruses to humans. Parasitol. Res. 2015; 114(4): 1625-7.
31. Abergel C., Claverie J.M. Pithovirus sibericum: réveil d’un virus géant de plus de 30 000 ans. Médecine/sciences. 2014; 30(3): 329-31.
32. Levasseur A., Andreani J., Delerce J., Bou Khalil J., Robert C., La Scola B. et al. Comparison of a Modern and Fossil Pithovirus Reveals Its Genetic Conservation and Evolution. Genome Biol. Evol. 2016; 8(8): 2333-9.
33. Andreani J., Aherfi S., Bou Khalil J.Y., Di Pinto F., Bitam I., Raoult D. et al. Cedratvirus, a Double-Cork Structured Giant Virus, is a Distant Relative of Pithoviruses. Viruses. 2016; 8(300): 1-11.
34. Bekliz M., Verneau J., Benamar S., Raoult D., La Scola B., Colson P.A. New Zamilon-like Virophage Partial Genome Assembled from a Bioreactor Metagenome. Front. Microbiol. 2015; 6(1308): 1-12.
35. Chelikani V., Ranjan T., Zade A., Shukla A., Kondabagil K. Genome segregation and packaging machinery in Acanthamoeba polyphaga mimivirus is reminiscent of bacterial apparatus. J. Virol. 2014; 88(11): 6069-75.
36. Maumus F., Epert A., Nogué F., Blanc G. Plant genomes enclose footprints of past infections by giant virus relatives. Nat. Commun. 2014; 5(4268): 1-10.
37. Suárez C., Welsch S., Chlanda P., Hagen W., Hoppe S., Kolovou A. et al. Open membranes are the precursors for assembly of large DNA viruses. Cell. Microbiol. 2013; 15(11): 1883-95.
38. Maumus F., Blanc G. Study of Gene Trafficking between Acanthamoeba and Giant Viruses Suggests an Undiscovered Family of Amoeba-Infecting Viruses. Genome Biol. Evol. 2016; 8(11): 3351-63.
39. Sharma V., Colson P., Chabrol O., Scheid P., Pontarotti P., Raoult D. Welcome to pandoraviruses at the ‘Fourth TRUC’ club. Front. Microbiol. 2015; 6(423): 1-11.
40. Sun C., Feschotte C., Wu Z., Mueller R.L. DNA transposons have colonized the genome of the giant virus Pandoravirussalinus. BMC Biol. 2015; 13(38): 1-12.
41. Claverie J.M., Abergel C. Giant viruses: The difficult breaking of multiple epistemological barriers. Stud. Hist. Philos. Biol. Biomed. Sci. 2016; 59: 89-99.
