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Журнал микробиологии, эпидемиологии и иммунобиологии. 2020; 97: 594-603

Значение мембранных фосфолипидов в реализации защитных стратегий бактерий

Андрюков Б. Г., Ляпун И. Н., Матосова Е. В.

https://doi.org/10.36233/0372-9311-2020-97-6-10

Аннотация

Для сохранения жизнеспособности в стрессовых условиях существования и реализации защитных стратегий бактерии должны воспринимать сигналы и быстро реагировать на экстремальные изменения параметров среды обитания. Результаты недавних экспериментальных исследований дополнили доминировавшую с 1970-х гг. парадигму о преимущественной роли фосфолипидов (ФЛ) как молекулярных строительных блоков для формирования клеточной стенки бактерий. Установлено, что специфические трансформации этих липидных доменов оказывают существенное влияние на форму и функционирование клеток, ремоделирование мембран и способность бактерий адаптироваться к стрессам окружающей среды. Физиологическая роль бактериальных фосфолипидов является плейотропной и определяет целостность и функцию клеток. Помимо ключевой структурной роли мембранных ФЛ в клетке, их промежуточные метаболиты способны выступать в качестве вторичных мессенджеров и играть важные сигнальные и регуляторные роли. Выявлено, что гомеостаз ФЛ имеет решающее значение для патогенеза бактериальных инфекций и необходим не только для поддержания жизнеспособности бактерий, но и для обеспечения их роста в период инфекции, а нарушение биосинтеза этих макромолекул снижает жизнеспособность бактерий. В последние десятилетия одним из главных достижений в концепции модели биологических мембран на основе «жидкой мозаики» стало понимание их доменной структуры. Это открытие представляет фундаментальный и практический интерес, поскольку фосфолипидные домены являются перспективной мишенью современных антимикробных стратегий. Цель настоящего обзора — обобщение современных представлений о структурной, метаболической и сигнальной роли мембранных ФЛ в реализации защитных механизмов бактерий и поддержании их жизнеспособности в неблагоприятных условиях среды обитания.
Список литературы

1. Sohlenkamp C., Geiger O. Bacterial membrane lipids: diversity in structures and pathways. FEMS Microbiol. Rev. 2016; 40(1): 133–59. https://doi.org/10.1093/femsre/fuv008

2. Dörr T., Moynihan P.J., Mayer C. Editorial: bacterial cell wall structure and dynamics. Front. Microbiol. 2019; 10: 2051. https://doi.org/10.3389/fmicb.2019.02051

3. Abellón-Ruiz J., Kaptan S.S., Baslé A., Claudi B., Bumann D., Kleinekathöfer U., et al. Structural basis for maintenance of bacterial outer membrane lipid asymmetry. Nat. Microbiol. 2017; 2(12): 1616–23. https://doi.org/10.1038/s41564-017-0046-x

4. Nicolson G.L. The Fluid-Mosaic Model of Membrane Structure: still relevant to understanding the structure, function and dynamics of biological membranes after more than 40 years. Biochim. Biophys. Acta. 2014; 1838(6): 1451–66. https://doi.org/10.1016/j.bbamem.2013.10.019

5. Slavetinsky C., Kuhn S., Peschel A. Bacterial aminoacyl phospholipids – biosynthesis and role in basic cellular processes and pathogenicity. Biochim. Biophys. Acta Mol. Cell Biol. Lipids. 2017; 1862(11): 1310–8. https://doi.org/10.1016/j.bbalip.2016.11.013

6. Barák I., Muchová K. The role of lipid domains in bacterial cell processes. Int. J. Mol. Sci. 2013; 14(2): 4050–65. https://doi.org/10.3390/ijms14024050

7. Dalebroux Z.D. Cues from the membrane: bacterial glycerophospholipids. J. Bacteriol. 2017; 199(13): e00136-17. https://doi.org/10.1128/JB.00136-17

8. Rowlett V.W., Mallampalli V.K.P.S., Karlstaedt A., Dowhan W., Taegtmeyer H., Margolin W., et al. Impact of membrane phospholipid alterations in Escherichia coli on cellular function and bacterial stress adaptation. J. Bacteriol. 2017; 199(13): e00849-16. https://doi.org/10.1128/JB.00849-16

9. Vitrac H., Mallampalli V.K.P.S., Dowhan W. Importance of phosphorylation/dephosphorylation cycles on lipid-dependent modulation of membrane protein topology by posttranslational phosphorylation. J. Biol. Chem. 2019; 294(49): 18853–62. https://doi.org/10.1074/jbc.RA119.010785

10. Bishop R.E. Phospholipid middle management. Nat. Microbiol. 2019; 4(10): 1608–9. https://doi.org/10.1038/s41564-019-0570-y

11. Sastre D.E., Basso LG.M., Trastoy B., Cifuente J.O., Contreras X., Gueiros-Filho F., et al. Membrane fluidity adjusts the insertion of the transacylase PlsX to regulate phospholipid biosynthesis in Gram-positive bacteria. J. Biol. Chem. 2020; 295(7): 2136–47. https://doi.org/10.1074/jbc.RA119.011122

12. Exterkate M., Caforio A., Stuart M.C.A., Driessen A.J.M. Growing membranes in vitro by continuous phospholipid biosynthesis from free fatty acids. ACS Synth. Biol. 2018; 7(1): 153–65. https://doi.org/10.1021/acssynbio.7b00265

13. Tang Y., Xia H., Li D. Membrane phospholipid biosynthesis in bacteria. In: Cao Y., eds. Advances in Membrane Proteins. Singapore: Springer; 2018: 77–119. https://doi.org/10.1007/978-981-13-0532-0_4

14. Danne L., Aktas M., Unger A., Linke W.A., Erdmann R., Narberhaus F. Membrane remodeling by a bacterial phospholipid-methylating enzyme. mBio. 2017; 8(1): e02082-16. https://doi.org/10.1128/mBio.02082-16

15. Parsons J.B., Rock C.O. Bacterial lipids: metabolism and membrane homeostasis. Prog. Lipid Res. 2013; 52(3): 249–76. https://doi.org/10.1016/j.plipres.2013.02.002

16. Shrivastava R., Jiang X., Chng S.S. Outer membrane lipid homeostasis via retrograde phospholipid transport in Escherichia coli. Mol. Microbiol. 2017; 106(3): 395–408. https://doi.org/10.1111/mmi.13772

17. Coleman G.A., Pancost R.D., Williams T.A. Investigating the origins of membrane phospholipid biosynthesis genes using outgroup-free rooting. Genome Biol. Evol. 2019; 11(3): 883–98. https://doi.org/10.1093/gbe/evz034

18. Tan Z., Khakbaz P., Chen Y., Lombardo J., Yoon J.M., Shanks J.V., et al. Engineering Escherichia coli membrane phospholipid head distribution improves tolerance and production of biorenewables. Metab. Eng. 2017; 44: 1–12. https://doi.org/10.1016/j.ymben.2017

19. Dowhan W. Understanding phospholipid function: why are there so many lipids? J. Biol. Chem. 2017; 292(26): 10755–66. https://doi.org/10.1074/jbc.X117.794891

20. Robertson R.M., Yao J., Gajewski S., Kumar G., Martin E.W., Rock C.O., et al. A two-helix motif positions the active site of lysophosphatidic acid acyltransferase for catalysis within the membrane bilayer. Nat. Struct. Mol. Biol. 2017; 24(8): 666–71. https://doi.org/10.1038/nsmb.3436

21. Lin T.Y., Gross W.S., Auer G.K., Weibel D.B. Cardiolipin alters Rhodobacter sphaeroides cell shape by affecting peptidoglycan precursor biosynthesis. mBio. 2019; 10(1): e02401-18. https://doi.org/10.1128/mBio.02401-18

22. Tan B.K., Bogdanov M., Zhao J., Dowhan W., Raetz C.R.H., Guan Z. Discovery of a novel cardiolipin synthase in Escherichia coli utilizing phosphatidylethanolamine and phosphatidylglycerol as substrates. Proc. Natl. Acad. Sci. USA. 2012; 109(41): 16504–9. https://doi.org/10.1073/pnas.1212797109

23. El Khoury M., Swain J., Sautrey G., Zimmermann L., Van Der Smissen P., Décout J.L., et al. Targeting bacterial cardiolipin enriched microdomains: an antimicrobial strategy used by amphiphilic aminoglycoside antibiotics. Sci. Rep. 2017; 7(1): 10697. https://doi.org/10.1038/s41598-017-10543-3

24. Mileykovskaya E., Ryan A.C., Mo X., Lin C.C., Khalaf K.I., Dowhan W., et al. Phosphatidic acid and N-acylphosphatidylethanolamine form membrane domains in Escherichia coli mutant lacking cardiolipin and phosphatidylglycerol. J. Biol. Chem. 2009; 284(5): 2990–3000. https://doi.org/10.1074/jbc.M805189200

25. Pogmore A.R., Seistrup K.H., Strahl H. The Gram-positive model organism Bacillus subtilis does not form microscopically detectable cardiolipin-specific lipid domains. Microbiology. 2018; 164(4): 475–82. https://doi.org/10.1099/mic.0.000639

26. Giles D.K., Hankins J.V., Guan Z., Trent M.S. Remodelling of the Vibrio cholerae membrane by incorporation of exogenous fatty acids from host and aquatic environments. Mol. Microbiol. 2011; 79(3): 716–28. https://doi.org/10.1111/j.1365-2958.2010.07476.x

27. Bramkamp M., Lopez D. Exploring the existence of lipid rafts in bacteria. Microbiol. Mol. Biol. Rev. 2015; 79(1): 81–100. https://doi.org/10.1128/MMBR.00036-14

28. Epand R.M., Epand R.F. Lipid domains in bacterial membranes and the action of antimicrobial agents. Biochim. Biophys. Acta. 2009; 1788(1): 289–94. https://doi.org/10.1016/j.bbamem.2008.08.023

29. Matsuzaki K., ed. Antimicrobial Peptides: Basics for Clinical Application. Kyoto: Springer; 2019.

30. Ursell T.S., Klug W.S., Phillips R. Morphology and interaction between lipid domains. Proc. Natl. Acad. Sci. USA. 2009; 106(32): 13301–6. https://doi.org/10.1073/pnas.0903825106

Journal of microbiology, epidemiology and immunobiology. 2020; 97: 594-603

The role of membrane phospholipids in the implementation of protective strategies of bacteria

Andryukov B. G., Lyapun I. N., Matosova E. V.

https://doi.org/10.36233/0372-9311-2020-97-6-10

Abstract

To maintain viability under stressful conditions of existence and the implementation of protective strategies, bacteria must receive signals and respond quickly to extreme changes in environmental parameters. The results of recent experimental studies complement the paradigm that has dominated since the 1970s on the predominant role of phospholipids (PL) as molecular building blocks in the formation of the cell wall of bacteria. Specific transformations of these lipid domains have shown to have a significant effect on the shape and function of cells, membrane remodeling, and the ability of bacteria to adapt to environmental stresses. The physiological role of bacterial PLs is pleiotropic and determines both cell integrity and cell function. In addition to the key structural role of membrane PL in the cell, their intermediate metabolites are able to act as secondary messengers and perform important signaling and regulatory functions. Modern studies of the mechanisms of detection and integration of signals from the environment that cause stationary-dynamic changes in phospholipid homeostasis and form pleiotropic resistant cellular bacterial phenotypes are of fundamental and practical interest. PL homeostasis was proved to be crucial for the pathogenesis of bacterial infections and is necessary not only to maintain the viability of bacteria, but also to ensure their growth during infection. The suppression of the biosynthesis of these macromolecules reduces the viability of bacteria. In recent decades, one of the main advances in the concept of "liquid mosaic" model of biological membranes has been the understanding of their domain structure. This discovery is of fundamental and practical interest, since phospholipid domains are a promising target for modern antimicrobial strategies. The aim of this review is to summarize modern ideas about the structural, metabolic and signaling role of membrane PL in the implementation of the protective mechanisms of bacteria and maintaining their viability in adverse environmental conditions.
References

1. Sohlenkamp C., Geiger O. Bacterial membrane lipids: diversity in structures and pathways. FEMS Microbiol. Rev. 2016; 40(1): 133–59. https://doi.org/10.1093/femsre/fuv008

2. Dörr T., Moynihan P.J., Mayer C. Editorial: bacterial cell wall structure and dynamics. Front. Microbiol. 2019; 10: 2051. https://doi.org/10.3389/fmicb.2019.02051

3. Abellón-Ruiz J., Kaptan S.S., Baslé A., Claudi B., Bumann D., Kleinekathöfer U., et al. Structural basis for maintenance of bacterial outer membrane lipid asymmetry. Nat. Microbiol. 2017; 2(12): 1616–23. https://doi.org/10.1038/s41564-017-0046-x

4. Nicolson G.L. The Fluid-Mosaic Model of Membrane Structure: still relevant to understanding the structure, function and dynamics of biological membranes after more than 40 years. Biochim. Biophys. Acta. 2014; 1838(6): 1451–66. https://doi.org/10.1016/j.bbamem.2013.10.019

5. Slavetinsky C., Kuhn S., Peschel A. Bacterial aminoacyl phospholipids – biosynthesis and role in basic cellular processes and pathogenicity. Biochim. Biophys. Acta Mol. Cell Biol. Lipids. 2017; 1862(11): 1310–8. https://doi.org/10.1016/j.bbalip.2016.11.013

6. Barák I., Muchová K. The role of lipid domains in bacterial cell processes. Int. J. Mol. Sci. 2013; 14(2): 4050–65. https://doi.org/10.3390/ijms14024050

7. Dalebroux Z.D. Cues from the membrane: bacterial glycerophospholipids. J. Bacteriol. 2017; 199(13): e00136-17. https://doi.org/10.1128/JB.00136-17

8. Rowlett V.W., Mallampalli V.K.P.S., Karlstaedt A., Dowhan W., Taegtmeyer H., Margolin W., et al. Impact of membrane phospholipid alterations in Escherichia coli on cellular function and bacterial stress adaptation. J. Bacteriol. 2017; 199(13): e00849-16. https://doi.org/10.1128/JB.00849-16

9. Vitrac H., Mallampalli V.K.P.S., Dowhan W. Importance of phosphorylation/dephosphorylation cycles on lipid-dependent modulation of membrane protein topology by posttranslational phosphorylation. J. Biol. Chem. 2019; 294(49): 18853–62. https://doi.org/10.1074/jbc.RA119.010785

10. Bishop R.E. Phospholipid middle management. Nat. Microbiol. 2019; 4(10): 1608–9. https://doi.org/10.1038/s41564-019-0570-y

11. Sastre D.E., Basso LG.M., Trastoy B., Cifuente J.O., Contreras X., Gueiros-Filho F., et al. Membrane fluidity adjusts the insertion of the transacylase PlsX to regulate phospholipid biosynthesis in Gram-positive bacteria. J. Biol. Chem. 2020; 295(7): 2136–47. https://doi.org/10.1074/jbc.RA119.011122

12. Exterkate M., Caforio A., Stuart M.C.A., Driessen A.J.M. Growing membranes in vitro by continuous phospholipid biosynthesis from free fatty acids. ACS Synth. Biol. 2018; 7(1): 153–65. https://doi.org/10.1021/acssynbio.7b00265

13. Tang Y., Xia H., Li D. Membrane phospholipid biosynthesis in bacteria. In: Cao Y., eds. Advances in Membrane Proteins. Singapore: Springer; 2018: 77–119. https://doi.org/10.1007/978-981-13-0532-0_4

14. Danne L., Aktas M., Unger A., Linke W.A., Erdmann R., Narberhaus F. Membrane remodeling by a bacterial phospholipid-methylating enzyme. mBio. 2017; 8(1): e02082-16. https://doi.org/10.1128/mBio.02082-16

15. Parsons J.B., Rock C.O. Bacterial lipids: metabolism and membrane homeostasis. Prog. Lipid Res. 2013; 52(3): 249–76. https://doi.org/10.1016/j.plipres.2013.02.002

16. Shrivastava R., Jiang X., Chng S.S. Outer membrane lipid homeostasis via retrograde phospholipid transport in Escherichia coli. Mol. Microbiol. 2017; 106(3): 395–408. https://doi.org/10.1111/mmi.13772

17. Coleman G.A., Pancost R.D., Williams T.A. Investigating the origins of membrane phospholipid biosynthesis genes using outgroup-free rooting. Genome Biol. Evol. 2019; 11(3): 883–98. https://doi.org/10.1093/gbe/evz034

18. Tan Z., Khakbaz P., Chen Y., Lombardo J., Yoon J.M., Shanks J.V., et al. Engineering Escherichia coli membrane phospholipid head distribution improves tolerance and production of biorenewables. Metab. Eng. 2017; 44: 1–12. https://doi.org/10.1016/j.ymben.2017

19. Dowhan W. Understanding phospholipid function: why are there so many lipids? J. Biol. Chem. 2017; 292(26): 10755–66. https://doi.org/10.1074/jbc.X117.794891

20. Robertson R.M., Yao J., Gajewski S., Kumar G., Martin E.W., Rock C.O., et al. A two-helix motif positions the active site of lysophosphatidic acid acyltransferase for catalysis within the membrane bilayer. Nat. Struct. Mol. Biol. 2017; 24(8): 666–71. https://doi.org/10.1038/nsmb.3436

21. Lin T.Y., Gross W.S., Auer G.K., Weibel D.B. Cardiolipin alters Rhodobacter sphaeroides cell shape by affecting peptidoglycan precursor biosynthesis. mBio. 2019; 10(1): e02401-18. https://doi.org/10.1128/mBio.02401-18

22. Tan B.K., Bogdanov M., Zhao J., Dowhan W., Raetz C.R.H., Guan Z. Discovery of a novel cardiolipin synthase in Escherichia coli utilizing phosphatidylethanolamine and phosphatidylglycerol as substrates. Proc. Natl. Acad. Sci. USA. 2012; 109(41): 16504–9. https://doi.org/10.1073/pnas.1212797109

23. El Khoury M., Swain J., Sautrey G., Zimmermann L., Van Der Smissen P., Décout J.L., et al. Targeting bacterial cardiolipin enriched microdomains: an antimicrobial strategy used by amphiphilic aminoglycoside antibiotics. Sci. Rep. 2017; 7(1): 10697. https://doi.org/10.1038/s41598-017-10543-3

24. Mileykovskaya E., Ryan A.C., Mo X., Lin C.C., Khalaf K.I., Dowhan W., et al. Phosphatidic acid and N-acylphosphatidylethanolamine form membrane domains in Escherichia coli mutant lacking cardiolipin and phosphatidylglycerol. J. Biol. Chem. 2009; 284(5): 2990–3000. https://doi.org/10.1074/jbc.M805189200

25. Pogmore A.R., Seistrup K.H., Strahl H. The Gram-positive model organism Bacillus subtilis does not form microscopically detectable cardiolipin-specific lipid domains. Microbiology. 2018; 164(4): 475–82. https://doi.org/10.1099/mic.0.000639

26. Giles D.K., Hankins J.V., Guan Z., Trent M.S. Remodelling of the Vibrio cholerae membrane by incorporation of exogenous fatty acids from host and aquatic environments. Mol. Microbiol. 2011; 79(3): 716–28. https://doi.org/10.1111/j.1365-2958.2010.07476.x

27. Bramkamp M., Lopez D. Exploring the existence of lipid rafts in bacteria. Microbiol. Mol. Biol. Rev. 2015; 79(1): 81–100. https://doi.org/10.1128/MMBR.00036-14

28. Epand R.M., Epand R.F. Lipid domains in bacterial membranes and the action of antimicrobial agents. Biochim. Biophys. Acta. 2009; 1788(1): 289–94. https://doi.org/10.1016/j.bbamem.2008.08.023

29. Matsuzaki K., ed. Antimicrobial Peptides: Basics for Clinical Application. Kyoto: Springer; 2019.

30. Ursell T.S., Klug W.S., Phillips R. Morphology and interaction between lipid domains. Proc. Natl. Acad. Sci. USA. 2009; 106(32): 13301–6. https://doi.org/10.1073/pnas.0903825106